Welcome to STATegraEMS v1.0 documentation.
Note: this documentation is temporal, we still developing the tool and we'll fill this documentation as soon as we release a first version.
STATegraEMS is an Experiment Management System (EMS) for omics experiments that supports different types of sequencing-based assays, proteomics and metabolomics data. We specifically support experiments such as RNA-seq, miRNA-seq, Chip-seq, Methyl-seq, or DNase-seq and can easily be extended to support additional sequencing assays. The system has been developed to provide research laboratories with an integrated system that offers a simple and effective way for experiment annotation and tracking of analysis pipelines from raw data to ready-to-use measurements, using free, open source software technologies.
STATegraEMS was published at BMC Systems Biology on March 2014, you can find an open-access version for the article here.
STATegra EMS: an experiment management system for complex next-generation omics experiments.
Hernández R, Boix-Chova N, Gómez-Cabrero D, Tegner J, Abugessaisa I, Conesa A
BMC Syst Biol 2014, 8(Suppl 2):S9.
Rafael Hernández de Diego, PhD Student, Main Developer.
Genomics of Gene Expression Lab, Centro de Investigaciones Príncipe Felipe, Valencia Spain
Ana Conesa, PhD.
Head Genomics of Gene Expression Lab, Centro de Investigaciones Príncipe Felipe, Valencia Spain
Professor Bioinformatics, Microbiology and Cell Science Department, University of Florida
For any question on STATegraEMS, users can send a mail to firstname.lastname@example.org.